Refereed Journal Papers

Florez-Larrahondo, G., Z. Liu, Y. Dandass, S. Bridges, and R. Vaughn. Integrating intelligent anomaly detection agents into distributed monitoring systems, Journal of Information Assurance and Security, Volume 1, Issue 1, March 2006. (available on-line at Wiley Interscience)

Nanduri B., F. M. McCarthy, S.M. Bridges, A. Corzo, M. D. Koter, J.J. Buza, B. van Den Berg, N. Wang, & S. C. Burgess, "Proteomics applied to disease in poultry," World's Poultry Science Journal, (To Appear) 2006.

McCarthy, F., A. Cooksey, N. Wang, S. Bridges, T. Pharr, & S. Burgess, "Modeling a Whole Organ using Proteomics: the Avian bursa of Fabricius," Proteomics , 2006. PMID: 16596704 (published on-line on April 2006).

Florez, G., Z. Liu, S. M. Bridges, A. Skjellum, and R. B. Vaughn. Lightweight monitoring of MPI programs in real-time. Concurrency and Computation: Practice and Experience, November 2005, Volume 17, Issue 3, pp 1547-1578. (published on-line on June 24.)

Wan, X., S. M. Bridges, and J. A. Boyle, Revealing gene transcription and translation initiation patterns in archaea using an interactive clustering model, Extremophiles, 2004, vol. 8, pp. 291-299. pdf

Siraj, Ambareen, Rayford Vaughn, and Susan Bridges, "Decision Making for Network Health Assessment in an Intelligent Intrusion Detection System Architecture," International Journal of Information Technology & Decision Making (IJITDM) 2004, 3(2): pp 281-306. pdf

Luo, Jianxiong, and Susan M. Bridges, “Mining Fuzzy Association Rules and Fuzzy Frequency Episodes for Intrusion Detection,” International Journal of Intelligent Systems, Vol. 15, No. 8, 2000, pp.687-704. pdf of preliminary version

Butler, Cary, Julian Boggess, and Susan Bridges, “Knowledge Based Planning of Military Engineering Tasks,” Expert Systems with Applications, Vol. 16, No. 2, 1999, pp. 221-232.

 Hodges, Julia, Susan Bridges, Charles Sparrow, Bruce Wooley, Bo Tang, and Chen Jun, “The Development of an Expert System for the Characterization of Containers of Contaminated Waste,” Expert Systems with Applications, Vol. 17, 1999, pp. 167-181.

 Bridges, Susan, Julia Hodges, Bruce Wooley, Donald Karpovich, and G. Brannon Smith, “Knowledge Discovery in an Oceanographic Database,” Applied Intelligence, Vol. 11, 1999, pp. 135-148.

 Bridges, Susan, Nancy Miller, and Gene Boggess, “A Placement Examination in Computer Science,” Computer Science Education, Vol. 7, No. 1, 1996, pp. 21-34.

 Bridges, Susan M., Cynthia Higginbotham, James M. McKinion, and J.E. Hodges, “Fuzzy Descriptors of Time Varying Data:  Theory and Application,” AI Applications, Vol. 9, No. 2, 1995, pp. 1-14.

 Bridges, Susan M., “A Model for Justification Production by Expert Planning Systems,” International Journal of Human Computer Studies Vol. 43, 1995, pp. 593-619. 

 Bridges, Susan M., “Graphics Assignments in Discrete Mathematics,” SIGCSE Bulletin, Vol. 25, No. 1, 1993, pp. 83?86.

Salin, M.L., and S.M. Bridges, “Chemiluminescence in Soybean Root Tissue: Effect of Various Substrates and Inhibitors,” Photobiochem. Photophys, 1983, 6: 57-64.

Salin, M.L., and S.M. Bridges, “Isolation and Characterization of an Iron-Containing Superoxide Dismutase from Water Lily,” Nuphar Luteum, Plant Physiology, 1982.

Bridges, S.M., and M.L. Salin, “Distribution of Iron-Containing Superoxide Dismutase in Vascular Plants,” Plant Physiology, 1981, 68: 275-278.

Salin, M.L., and S.M. Bridges, “ Chemiluminescence in Wounded Root Tissue:  Evidence for Peroxide Involvement,” Plant Physiology, 1981, 67: 43-46.

Salin, M.L., and S.M. Bridges, “Isolation and Characterization of an Iron-Containing Superoxide Dismutase from a Eukaryote,” Archives of Biochemistry and Biophysics, 1979, 201: 369-374.

Refereed Conference Papers
 

Diana Chan, Susan Bridges, Shane Burgess, "An Ensemble Method for Identifying Robust Features for Biomarker Identification", International Workshop on Feature Selection for Data Mining: Interfacing Machine Learning and Statistics, April 22, 2006, Bethesda, Maryland.

Mahmood Hossain, Susan Bridges, Yong Wang, and Julia Hodges. "An Ensemble Approach for Generating Partitional Clusters from Multiple Cluster Hierarchies." IEEE International Conference on Granular Computing (IEEE GrC 2006), Atlanta, May 10-12, 2006.

Florez, G., S. Bridges, R. Vaughn, "Efficient Modeling of Discrete Events for Anomaly Detection using Hidden Markov Models," accepted The 8th Information Security Conference (ISC'05), Singapore, Sept. 20-23, 2005.

Florez, G., S. Bridges, E. Hansen, "Incremental Estimation of Discrete Hidden Markov Models Based on a New Backward Procedure," AAAI 2005, Pittsburg, PA, July 9-13.

Liu, Z. and Susan M. Bridges, "Detecting Anomalies in Cluster-based Parallel Programs Using a Wavelet Based Approach," 2005 IEEE Networking, Sensing and Control, Tucson, Arizona, March 19-22, 2005, pp. 348-353.

Liu, Z., S. M. Bridges, and R. B. Vaughn, "Combining Static Analysis and Dynamic Learning to Build Accurate Intrusion Detection Models," IEEE International Information Assurance Workshop, College Park, Maryland, March 23-24, 2005, pp. 164-177.

Liu, Z. and S. M. Bridges, "Dynamic Learning of Automata from the Call Stack Log for Anomaly Detection," IEEE International Conference on Information Technology, Las Vegas, Nevada, April 4-6, 2005, pp. 774-779.

Siraj, Ambareen, Rayford Vaughn, and Susan Bridges, "Intrusion Sensor Data Fusion in an Intelligent Intrusion Detection System Architecture," Minitrack on Frameworks and Methods for the Study and Analysis of Trust in Information Systems in the Software Technology Track of the Thirty-Seventh Hawaii International Conference on System Sciences (HICSS-37), January 5-8, 2004.

Torres, Miguel, Zhen Liu, German Florez, Ray Vaughn, and Susan Bridges, "Attacking a High Performance Computer Cluster," Proceedings of the 15th Annual Canadian Information Technology Security Symposium, Ottawa Canada, May 12th-15th, 2003, CD ROM Proceedings, 14 pages.

Liu, Zhen, Susan M. Bridges, and Rayford B. Vaughn, "Classification of Anomalous Traces of Privileged and Parallel Programs by Neural Networks," FUZZIEEE 2003, pp. 1225-1230, St. Louis Missouri, May 25-28, 2003

Bridges, S., Vaughn, R. and Siraj, A. "AI Techniques Applied to High Performance Computing Intrusion Detection" Proceeding of the Tenth International Conference on Telecommunication Systems, Modeling and Analysis, Monterey CA, Volume 2, pp. 100-114, October 3-6, 2002

Wan, Xiufeng, Susan M. Bridges, John A. Boyle, and Alan P. Boyle, "Interactive Clustering for Exploration of Genomic Data," Proceedings of the Artificial Neural Networks in Engineering Conference (ANNIE 2002), St. Louis, MO, November 10-13, 2002. pdf

Florez, German, Susan Bridges, and Rayford Vaughn, "An Improved Algorithm for Fuzzy Data Mining for Intrusion Detection," Proceedings of the North American Fuzzy Information Processing Society Conference (NAFIPS 2002), New Orleans, LA, June 27-29, 2002. (CD ROM proceeding, 6 pages) pdf

Smith, George Brannon, and Susan Bridges, "Fuzzy Spatial Data Mining," Proceedings of the North American Fuzzy Information Processing Society Conference (NAFIPS 2002), New Orleans, LA, June 27-29, 2002. pdf

Liu, Zhen, German Florez, and Susan Bridges 2002. A Comparison Of Input Representation In Neural Networks: A Case Study in Intrusion Detection. Proceedings of the International Joint Conference on Neural Networks, May 12-17, Honolulu, Hawaii. pdf

Hossain, Mahmood and Susan M. Bridges. 2001. A framework for an adaptive intrusion detection system with data mining. In Proceedings of the 13th Annual Canadian Information Technology Security Symposium, Ottawa, Canada, June, 2001. pdf

Liu, Qitao, Susan M. Bridges and Ioana Banicescu. 2001. Parallel genetic algorithms for tuning a fuzzy data mining system. In Proceedings of the Artificial Neural Networks in Engineering Conference (ANNIE 2001), St. Louis, MO, November 4-7, 2001. pdf

Luo, Jianziong, Susan Bridges, Rayford Vaughn. 2001. Fuzzy Frequent Episodes for Real-time Intrusion Detection. FUZZIEEE 2001, Melbourne, AU, Dec 2-5. pdf

Siraj, Ambareen, Susan M. Bridges, and Rayford B. Vaughn. 2001. Fuzzy cognitive maps for decision support in intrusion detection systems. Proceedings of ISFA- NAFIPS-2001, July 25 - 28, 2001. pdf

Wang, Liangjiang, Susan M. Bridges, Lois C. Boggess, and Jac J. Varco, “Neural Network Classification of Leaf Reflectance Spectra for Predicting Nutrient Deficiency of Cotton,” Proceedings of ANNIE 2000, St. Louis, MO.

Wooley, Bruce, Diane Mosser-Wooley, Anthony Skjellum, and Susan Bridges, “Machine Learning Using Clusters of Computers,” Proceedings of MPIDC2000 Message Passing Interface and High-Performance Clusters Developer’s and User’s Conference, Cornell University, March 21-23, 2000.

Bridges, Susan M., and Rayford M. Vaughn, “Fuzzy Data Mining and Genetic Algorithms Applied to Intrusion Detection,” Proceedings of the Twenty-third National Information Systems Security Conference, Baltimore, MD, October 2000. pdf
 
Bridges, Susan M., and Rayford M. Vaughn, “Intrusion Detection Via Fuzzy Data Mining,” Proceedings of the 12th Annual Canadian Information Technology Security Symposium, Ottawa, Canada, June 19-23, 2000, pp.109-122. pdf

Wooley, Bruce, Susan Bridges, Julia Hodges, and Anthony Skjellum, “Scaling the Data Mining Step in Knowledge Discovery Using Oceanographic Data,” Proceedings of the Thirteenth International Conference on Industrial & Engineering Applications of Artificial Intelligence & Expert Systems (IEA/AIE), June 19-22, 2000. pdf   

Wang, Wendong, and Susan M. Bridges, “Genetic Algorithm Optimization of Membership Functions for Mining Fuzzy Association Rules,” Proceedings of the 7th International Conference on Fuzzy Theory & Technology, Atlantic City, NJ, February 27 – March 3, 2000, pp.131-134. pdf

Bridges, Susan, “Teaching Search Strategies in an Introductory Artificial Intelligence Course Using Peg Jumping Puzzle,” Proceedings of the ASEE 1999 Southeastern Section Meeting, Clemson, SC, April 11 - 13, 1999.  (published as a CD)

Klimek, Lee R., Bruce Wooley, Susan M.Bridges, Julia Hodges, Andrew Watkins, and Sara Smolensky, “A Comparison of the Performances of a Bayesian Algorithm and a Kohonen Map for Clustering Texture Data,” ANNIE’99, Proceedings published as Smart Engineering Systems Design: Neural Networks, Fuzzy Logic, and Complex Systems, Vol. 9, edited by Cihan Dagli, Anna L. Buczak, Joydeep Ghosh, Mark J. Embrechts, and Okan Esroy, August 1999, pp. 777-784, New York: ASME Press. pdf

Sparrow, Charles, Susan M. Bridges, Julia Hodges, and Jun Chen, “Tuning A Fuzzy Nuclear Waste Classification System Using Genetic Algorithms,” Proceedings of the American Nuclear Society 1998 Winter Meeting, Washington D. C., November 15 – 19, 1998.
  
Sparrow, Charles, Susan Bridges, Julia Hodges, and Jun Chen, “Characterization of Transuranic Waste Using Artificial Intelligence Techniques,” Proceedings of the Nuclear Waste Instrumentation Engineering Conference, SPIE Photonics East, Boston, MA, November 1-6, 1998.
 
Wooley, Bruce, Yoginder Dandass, Susan Bridges, Julia Hodges, and Anthony Skjellum, “Scalable Knowledge Discovery from Oceanographic Data,” Proceedings of the Artificial Neural Networks in Engineering Conference (ANNIE ‘98), St. Louis, MO, November 1998, pp.413-424.
 
Willers, Jeffrey, Susan Bridges, Xiaofeng Ma, James McKinion, and Jean Liang, “Designing Speech Interface Applications For Acquisition Of Agricultural Information, Proceedings of the 1996 Kansas State University Conference on Applied Statistics in Agriculture, Manhattan Kansas, April 1997, pp.131-134.
 
Bridges, Susan. “Adding Explanation Capability To A Knowledge?Based System:  A Case Study,” Proceedings of Applications of Artificial Intelligence 1993:  Knowledge?Based Systems in Aerospace and Industry, Orlando, FL, April 13?15, 1993,pp.40-49.
  
Bridges, Susan and J. D. Johannes, “Integration of Knowledge Sources for Explanation Production,” Proceedings of the Second International Conference on Industrial and Engineering Applications of Artificial Intelligence and Expert Systems, Tullahoma, TN, 1989, pp.944-951.
 
Bridges, Susan and J.D. Johannes, “Explanation Production by Expert Planners,” Proceedings of the Fourth Conference on Artificial Intelligence for Space Applications, Huntsville, AL, 1988.
 
Bridges, Susan and J. D. Johannes, “Iterative?Deepening Heuristic Search for Optimal and Semi?Optimal Resource Allocation,” Proceedings of the Third Conference on Artificial Intelligence for Space Applications, Huntsville, AL, 1987.
 
Non-Refereed Conference Papers
 
Yue, Xiaozhen, Susan M. Bridges, Jac J. Varco, and Horacio Buscaglia, “Predicting Nitrogen Deficiencies In Cotton From Reflectance Spectra Using A Neural Network Ensemble,” Proceedings of the 1999 National Remote Sensing Applications Conference and Workshop, Auburn University, November 17-19, 1999 (published as a CD).

Charles Sparrow, Susan Bridges, Julia Hodges, and Jun Chen. November, “Characterization of Transuranic Waste Using Artificial Intelligence Techniques,” Proceedings of the Nuclear Waste Instrumentation Engineering Conference, SPIE Photonics East, Boston, MA, November 1998.

Bridges, S., J. Hodges, and C. Sparrow, “The Development Of An Expert System For The Characterization Of Waste Assay Data,”Proceedings of the 5th Nondestructive Assay and Nondestructive Examination Waste Characterization Conference, Salt Lake City, Utah, January 14-16, 1997.
 
Liang, C., J. L. Willers, S. Bridges, and J. M. McKinion, “Cotton Talk:  A Speech Interface for Cotton Plant Mapping,” Proceedings of the 1996 Beltwide Cotton Conferences – Cotton Engineering Systems Conference, pp. 522-527.

Bridges, Susan, “The Design of an Attribute Grammar for the Generation of Natural Language Explanations,” Proceedings of the 1987 University of Alabama ACM Student Conference, Birmingham, AL, 1987.

Book Chapters

Hodges, Harry F., Frank D. Whisler, Susan M. Bridges, K. Raja Reddy, and James M. McKinion, “Simulation in Crop Management – GOSSYM/COMAX,” In Agricultural Systems Modeling and Simulation, ed. Bob Peart and R. Bruce Curry, New York:  Marcel Dekker, Inc., 1997.

Reports
 
Hodges, Julia, Susan Bridges, George Brannon Smith, Sean Taylor, Andrew Watkins, and Bruce Wooley.  “Knowledge Discovery in an Object-Oriented Oceanographic Database System,” Technical Report, December 1999

Hodges, Julia, Susan Bridges, Bruce Wooley, Donald Karpovich, and Brannon Smith, “Knowledge Discovery in an Object-Oriented Oceanographic Database System,” Technical Report No. MSU-971021, Department of Computer Science, Mississippi State University, October 21, 1997.
 
Xiofeng Ma, Susan Bridges, and Jeffrey Willers, “Sampletalk: A Speech-Enabled Application for Plant Stand Sampling,” Technical Report No. MSU-970630, Department of Computer Science, Mississippi State University, June 30, 1997.
 
Julia Hodges, Susan Bridges, and Charles Sparrow, “Integrating Multiple Sources of Information in a Radiological Waste Characterization Expert System,” Technical Report No. MSU-970620, Department of Computer Science, Mississippi State University, June 20, 1997.
 
Susan Bridges, Julia Hodges, and Charles Sparrow, “A Comparative Study of Different Methods for Representing and Reasoning with Uncertainty for a Waste Characterization Task,” Technical Report No. MSU-970613, Department of Computer Science, Mississippi State University, June 13, 1997.

Bridges, Susan, “Decision Support Architecture and Design Study: Security Manager,” Report for Litton Industries, 1997.

Butler, Cary D., Phillip L. Doiron, Julian E. Boggess, Susan Bridges, and David Graham, “Decision Algorithms for the Obstacle Planner Software: Knowledge-Based Obstacle Planning, Report 3,” U.S. Army Corps of Engineers, Washington, DC, Technical Report No. GL-96-10, August 1997.
 
Bridges, Susan, Julia Hodges, and Bruce Wooley, “Preliminary Results in the Use of Dempster-Shafer Theory for a Radiological Waste Characterization Expert System,” Technical Report No. MSU-961210, Department of Computer Science, Mississippi State University, December 12, 1996.
 
Hodges, Julia, Susan Bridges, and Shiyun Yie, “Preliminary Results In The Use Fuzzy Logic for a Radiological Waste Characterization Expert System,” Technical Report No. MSU-960626, Department of Computer Science, Mississippi State University, June 26, 1996.
 
Hodges, Julia, Susan Bridges, and Shiyun Yie, “Preliminary Results In The Use of Certainty Factors For A Radiological Waste Characterization Expert System,” Technical Report No. MSU-961201, Department of Computer Science, Mississippi State University, December 1, 1996.
 
Bridges, Susan, Julia Hodges, and Charles Sparrow, “The Application of Artificial Intelligence Techniques to the Analysis of Waste Assay Data,” Technical Report No. MSU-960625, Department of Computer Science, Mississippi State University, June 25, 1996.
 
Bridges, Susan, Julia Hodges, and Bruce Wooley, “Preliminary Results in the Use of Bayesian Networks for a Radiological Waste Characterization Expert System,” Technical Report No. MSU-960625, Department of Computer Science, Mississippi State University, June 25, 1996.
 
Hodges, Julia, Susan Bridges, Shiyun Yie, Yolanda Johnson, and Marcus Gentry, “The Design of an Object-Oriented Radiological Waste Database,” Technical Report No. MSU-960617, Department of Computer Science, Mississippi State University 2, June 17, 1996.
 
Hodges, Julia, Shekar Ramanathan, and Susan Bridges, “Re-engineering a Relational Database System to Produce a Prototype Object-Oriented Geophysical Database System,” Center for Air Sea Technology Technical Report No. 01-95, June 20, 1995.
 
Hodges, Julia, Shekar Ramanathan, and Susan Bridges, “A Prototype Object-Oriented Database System Developed by Re-engineering a Relational Database System,” Technical Report No. MSU-950612, Department of Computer Science, Mississippi State University, June 12, 1995.
  
Bridges, Susan, and Liang-Chun Chen, “Conversion of an Oceanographic Expert System to a C-Based Language,” Naval Research Laboratory, Stennis Space Center, MS, Technical Note NRL/FR/7240-94-9449, February 1, 1995.

Bridges, Susan, Cary D. Butler, Phillip L. Doiron, George B. McKinley, Mark R. Jourdan, K. Mickle Hayward, Julian E. Boggess, David Stuart, and Robert Undersood, “Decision Algorithms for the Obstacle Planner Software: Report 1, Basic Concepts and Procedures,” U.S. Army Corps of Engineers Waterways Experiment Station, Technical Report No. GL-94, 1994.
  
Bridges, Susan, “Adding Explanation Capability to a Knowledge?Based System for Interpretation of Oceanographic Images,” Naval Oceanographic and Atmospheric Research Laboratory Technical Note 296, September 1992.
  

Bridges, Susan, Julia Hodges, Charles Sparrow, Bruce Wooley, and Shiyun Yie, "The Development of an Expert System for the Characterization of Waste Assay Data," Proceedings of the 5th Nondestructive Assay and Nondestructive Examination Waste Characterization Conference, Salt Lake City, Utah, January 1997, pages 421-53.

Hodges, Julia, Susan Bridges, and Shiyun Yie, Preliminary Results in the Use of Certainty Factors for a Radiological Waste Characterization Expert System, Technical Report MSU-961201, December 1, 1996.

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[View Abstract]       [FTP Document]

[View Abstract]      [FTP Document]

[View Abstract]       [FTP Document]

Hodges, Julia, Shekar Ramanathan, and Susan Bridges, A Prototype Object-Oriented Geophysical Database System Developed by Re-Engineering a Relational Database System, Technical Report MSU-950612, June 12, 1995.

[View Abstract]       [FTP Document]